Scripts disponibles en Github
Newbler (Linux)
SPADES (Linux)
MIRA (Linux)
Geneious (Comercial. Linux, MacOX, Win)
CLC (Comercial. Linux, MacOX, Win)
Scaffold builder (linux, online)
Medusa (linux, online)
RAST server (web)
NCBI Prokaryotic Genomes Automatic Annotation Pipeline (PGAAP, Web.)
myRAST (Linux, MacOX, Win)
Mauve (Linux, MacOX, Win)
CMG BioTools (Linux- virtual)
ACT (Linux, MacOX, Win)
WebACT (web)
BRIGS (Linux, MacOX, Win)
PhySpy (linux)
Artemis (Linux, MacOX, Win)
Geneious (Comercial. Linux, MacOX, Win)
CLC (Comercial. Linux, MacOX, Win)
DNAplotter (Java)
CL genomics (Windows, MacOX)
Sequin (Linux, MacOX, Win).
QIIME (Mac, linux y Win. Análisis de secuencias de 16S)
STAMP (Mac, linux y Win. Análisis estadísticos de muestras metagenómicas)